WormMine: Gene WBGene00092650

• WormBase Gene ID: WBGene00092650
• Gene Name: PPA03096
• Sequence Name: PPA03096
• Organism: Pristionchus pacificus
• Automated Description: Predicted to enable actin binding activity. Is an ortholog of C. elegans F53E2.2. In C. elegans, F53E2.2 is involved in several processes, including actin filament-based process; embryo development; and positive regulation of actin filament polymerization.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Pristionchus pacificus
• Taxon Id: 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:PPA03096.1	PPA03096.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:PPA03096	PPA03096		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria infection: Serratia marcescens	Pristionchus pacificus Genes with expression levels changed significantly after treatment of Serratia marcescens.	Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets.	WBPaper00041606:PP_S.marcescens_regulated
Bacteria infection: Bacillus thurigiensis DB27	Pristionchus pacificus Genes with expression levels changed significantly after treatment of Bacillus thurigiensis DB27.	Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets.	WBPaper00041606:PP_B.thuringiensis-DB27_regulated
Germline ablation	Genes that showed differential expression in the comparison of germline-ablated animals fed on S. marcescens versus germline-ablated animals fed E. coli OP50.	Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes.	WBPaper00041466:PP_S.marcescens_regulated

0 Expression Patterns

1 GO Annotation

0 Homologues

0 Locations

1 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term