WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00094292 Gene Name  Ppa-cup-5
Sequence Name  ? PPA04738 Organism  Pristionchus pacificus
Automated Description  Predicted to enable monoatomic cation channel activity. Is an ortholog of C. elegans cup-5. In C. elegans, cup-5 is involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; determination of adult lifespan; and lysosomal lumen acidification. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA04738a.1 PPA04738a.1   [unknown]
Transcript:PPA04738b.1 PPA04738b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA04738a PPA04738a   [unknown]
CDS:PPA04738b PPA04738b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term