WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00096064 Gene Name  Ppa-tre-1
Sequence Name  ? PPA06510 Organism  Pristionchus pacificus
Automated Description  Predicted to enable RNA binding activity and alpha,alpha-trehalase activity. Predicted to be involved in trehalose metabolic process. Is an ortholog of C. elegans tre-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA06510.1 PPA06510.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA06510 PPA06510   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Xenorhabdus nematophila Pristionchus pacificus Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila. Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets. WBPaper00041606:PP_X.nematophila_regulated

0 Expression Patterns

5 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  enables
  enables

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term