WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00098448 Gene Name  PPA08894
Sequence Name  ? PPA08894 Organism  Pristionchus pacificus
Automated Description  Predicted to enable inositol oxygenase activity and iron ion binding activity. Predicted to be involved in inositol catabolic process. Predicted to be located in cytoplasm. Is an ortholog of C. elegans C54E4.5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA08894.1 PPA08894.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA08894 PPA08894   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Ppa-sul-2(tu1069) animals comparing to in wild type PS312 animals at 4M1 stage. DESeq244(version 1.18.1) with two criteria, P-value < 0.05 and Fold change > 2. WBPaper00064862:Ppa-sul-2(tu1069)_4M1_Down

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term