WormMine: Gene WBGene00104201

• WormBase Gene ID: WBGene00104201
• Gene Name: Ppa-hum-7
• Sequence Name: PPA14647
• Organism: Pristionchus pacificus
• Automated Description: Predicted to enable ATP binding activity and cytoskeletal motor activity. Predicted to be involved in signal transduction. Predicted to be part of myosin complex. Is an ortholog of C. elegans hum-7. In C. elegans, hum-7 is involved in actin-myosin filament sliding.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Pristionchus pacificus
• Taxon Id: 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:PPA14647.1	PPA14647.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:PPA14647	PPA14647		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Germline ablation	Genes that showed differential expression in the comparision of germline-ablated animals fed on E. coli OP50 versus un-ablated animals fed E. coli OP50.	Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes.	WBPaper00041466:PP_germline-ablation_regulated
	Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides.	The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid).	WBPaper00041472:Phosphorylated_protein
	P.pacificus genes enriched in intestine.	Cuffdiff (version v2.0.1)	WBPaper00049334:PE_intestine_enriched
Yeast culture: C.curvatus	Transcripts that showed significantly decreased expression after fed with yeast culture C.curvatus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.curvatus_vs_OP50_downregulated
Yeast culture: C.albidus	Transcripts that showed significantly increased expression after fed with yeast culture C.albidus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.albidus_vs_OP50_upregulated
Yeast culture: C.albidus	Transcripts that showed significantly decreased expression after fed with yeast culture C.albidus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.albidus_vs_OP50_downregulated
Yeast culture: C.curvatus	Transcripts that showed significantly increased expression after fed with yeast culture C.curvatus, comparing to fed with OP50.	Cuffdiff (version 2.0.1)	WBPaper00050265:C.curvatus_vs_OP50_upregulated

0 Expression Patterns

4 GO Annotation

0 Homologues

0 Locations

4 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term