WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00128858 Gene Name  Cjp-hrpl-1
Sequence Name  ? CJA09654 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in nucleus. Is an ortholog of C. elegans hrpl-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA09654c.1 CJA09654c.1   [unknown]
Transcript:CJA09654a.1 CJA09654a.1   [unknown]
Transcript:CJA09654b.1 CJA09654b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA09654c CJA09654c   [unknown]
CDS:CJA09654b CJA09654b   [unknown]
CDS:CJA09654a CJA09654a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA21810, GGAGAGGCTCCAAGATACGATGATGAAGAGGGAGGAAATGGGGAAAGGAGGGAAGGAATC, WBGene00177382   Expr1083480 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA09654, GAACTGCAGAGTTTCCGACGATCGAGCAGGCGAACGAAGTGATCTCTCAAGTCAACCATT, WBGene00128858   Expr1087730 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  located_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term