WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00131338 Gene Name  Cjp-cdf-1
Sequence Name  ? CJA12134 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable monoatomic cation transmembrane transporter activity. Predicted to be involved in monoatomic cation transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans cdf-1. In C. elegans, cdf-1 is involved in cellular response to zinc ion; positive regulation of Ras protein signal transduction; and positive regulation of vulval development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA12134a.1 CJA12134a.1   [unknown]
Transcript:CJA12134b.1 CJA12134b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA12134b CJA12134b   [unknown]
CDS:CJA12134a CJA12134a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-cdf-1, CCGGCTATTTTCACCGATGCTGCTTTCACAATCAAAAAGTATTTTCATGACATGGGAGTG, WBGene00131338   Expr1079966 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term