WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00132021 Gene Name  Cjp-catp-5
Sequence Name  ? CJA12817 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable ATP binding activity; ATP hydrolysis activity; and P-type transmembrane transporter activity. Predicted to be located in membrane. Is an ortholog of C. elegans catp-5. In C. elegans, catp-5 is involved in polyamine transmembrane transport. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA12817b.1 CJA12817b.1   [unknown]
Transcript:CJA12817c.1 CJA12817c.1   [unknown]
Transcript:CJA12817a.1 CJA12817a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA12817a CJA12817a   [unknown]
CDS:CJA12817b CJA12817b   [unknown]
CDS:CJA12817c CJA12817c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-catp-5, CACATCCTATGCAGTGTCTAAATATATGGCCGCTTATTCGTTAAACGAATTCTTGTCCGT, WBGene00132021   Expr1088195 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
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  located_in
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0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
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  located_in
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0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term