WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00132053 Gene Name  Cjp-snf-8
Sequence Name  ? CJA12849 Organism  Caenorhabditis japonica
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans snf-8. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA12849d.1 CJA12849d.1   [unknown]
Transcript:CJA12849b.1 CJA12849b.1   [unknown]
Transcript:CJA12849c.1 CJA12849c.1   [unknown]
Transcript:CJA12849a.1 CJA12849a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA12849a CJA12849a   [unknown]
CDS:CJA12849b CJA12849b   [unknown]
CDS:CJA12849c CJA12849c   [unknown]
CDS:CJA12849d CJA12849d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-snf-8, CAAATCTACCTGGACATTTATGCGTTGATGAGACCTCCAGGAAATTGGAATCGTTTTTAC, WBGene00132053   Expr1073403 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term