WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00137781 Gene Name  Cjp-vab-10
Sequence Name  ? CJA18576 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable microtubule binding activity. Predicted to be involved in intermediate filament cytoskeleton organization. Is an ortholog of C. elegans vab-10. In C. elegans, vab-10 is involved in epidermis morphogenesis. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA18576.2 CJA18576.2   [unknown]
Transcript:CJA18576.1 CJA18576.1   [unknown]
Transcript:CJA18576.3 CJA18576.3   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA18576 CJA18576   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA10662, CTCGCCCGGCGGCGTTTCGCCACAACAGCGGCTGTCGTCGTATTCGTTGCACAGTATTGT, WBGene00129866   Expr1074745 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA09232, AACTAGTGAACATCCGGCCAGAAGACATTGTCGAAGGAAACGGAAAACTGACACTTGGTC, WBGene00128436   Expr1092049 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-vab-10, GAGAAGATTACGCATGAGATAGAGCGACAGAAGAAGACGTGCAGTTGTTGCCAGCCGTAT, WBGene00137781   Expr1088483 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term