WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00180915 Gene Name  Cjp-ubc-16
Sequence Name  ? CJA25343 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable U3 snoRNA binding activity. Is an ortholog of C. elegans ubc-16. In C. elegans, ubc-16 is involved in protein ubiquitination. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA25343.1 CJA25343.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA25343 CJA25343   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA25343, ATTTAGTCGACTGGAAACCGCTGTTGGAAGAAACGCCGATGCAGAGAAACGGGCACAAAG, WBGene00180915   Expr1070346 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-ubc-16, AAGCATCCCATCGACGACGCCATCTACGTGAGAACTTGTAATAAGAATCCCAGCAAGACG, WBGene00125844   Expr1079986 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term