WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00203721 Gene Name  Ppa-mca-3
Sequence Name  ? PPA30855 Organism  Pristionchus pacificus
Automated Description  Predicted to enable ATP binding activity; ATP hydrolysis activity; and P-type calcium transporter activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans mca-3. In C. elegans, mca-3 is involved in several processes, including negative regulation of cytosolic calcium ion concentration; positive regulation of endocytosis; and positive regulation of growth rate. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA30855.1 PPA30855.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA30855 PPA30855   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides. The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid). WBPaper00041472:Phosphorylated_protein

0 Expression Patterns

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables
  located_in
  enables
  enables

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables
  located_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term