WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00206300 Gene Name  Ppa-mlst-8
Sequence Name  ? PPA33440 Organism  Pristionchus pacificus
Automated Description  Predicted to be involved in TOR signaling. Predicted to be part of TORC1 complex and TORC2 complex. Is an ortholog of C. elegans mlst-8. In C. elegans, mlst-8 is involved in mesendoderm development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA33440.1 PPA33440.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA33440 PPA33440   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides. The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid). WBPaper00041472:Phosphorylated_protein
Yeast culture: C.curvatus Transcripts that showed significantly decreased expression after fed with yeast culture C.curvatus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.curvatus_vs_OP50_downregulated

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term