WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00209073 Gene Name  CJA33226
Sequence Name  ? CJA33226 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and small molecule binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-4. In C. elegans, tat-4 is involved in sterol metabolic process. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA33226b.1 CJA33226b.1   [unknown]
Transcript:CJA33226a.1 CJA33226a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA33226a CJA33226a   [unknown]
CDS:CJA33226b CJA33226b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-tat-4, GAATCGCTGGAAAAGAGGGGTTACAGGCAGCAATGGCTTGTGACTTTGCCATTGCTAGAT, WBGene00123166   Expr1083289 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
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0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
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  located_in
  involved_in
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0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term