WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222198 Gene Name  Bma-srp-2.8
Sequence Name  ? Bm1937 Organism  Brugia malayi
Automated Description  Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be located in extracellular space. Is an ortholog of C. elegans srp-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm1937.1 Bm1937.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm1937 Bm1937   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Time-course transcript abundance profiles. P116, k-means clusters of Brugia malayi during development in Aedes aegypti LVP between day 1 and 8 post infection; H114, k-means clusters of Ae. aegypti LVP infected with B. malayi between day 0 and 8 post infection; and HR14, host response profile comparing infected vs. uninfected A. aegypti LVP. Non-flat profiles (p < 0.01 and maximum fold-difference among time points > 2) were grouped into common temporal patterns using k-means clustering. WBPaper00045439:BM_Cluster_P13
  Transcripts that showed significantly increased expression at infective lava stage 3 (iL3) (from mosquitoes), comparing to L3 Day 6 worms. Differential gene expression analysis was performed using both DESeq and EdgeR, and the overlapping genes with FDR<0.01 were retained. WBPaper00059852:B.malayi_iL3_stage_upregulated_vs_L3Day6
  Transcripts that showed significantly increased expression at infective lava stage 3 (iL3) (from mosquitoes), comparing to L3 Day 9 worms. Differential gene expression analysis was performed using both DESeq and EdgeR, and the overlapping genes with FDR<0.01 were retained. WBPaper00059852:B.malayi_iL3_stage_upregulated_vs_L3Day9

0 Expression Patterns

2 GO Annotation

Annotation Extension Qualifier
  located_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term