WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00224413 Gene Name  Bma-pkn-1
Sequence Name  ? Bm4152 Organism  Brugia malayi
Automated Description  Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in signal transduction. Is an ortholog of C. elegans pkn-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm4152e.1 Bm4152e.1   [unknown]
Transcript:Bm4152d.1 Bm4152d.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm4152e Bm4152e   [unknown]
CDS:Bm4152d Bm4152d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Time-course transcript abundance profiles. P116, k-means clusters of Brugia malayi during development in Aedes aegypti LVP between day 1 and 8 post infection; H114, k-means clusters of Ae. aegypti LVP infected with B. malayi between day 0 and 8 post infection; and HR14, host response profile comparing infected vs. uninfected A. aegypti LVP. Non-flat profiles (p < 0.01 and maximum fold-difference among time points > 2) were grouped into common temporal patterns using k-means clustering. WBPaper00045439:BM_Cluster_P13
  Transcripts that showed significantly decreased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M30_vs_L4
  Transcripts that showed significantly increased expression in female B. malayi 30 days after infecting gerbils, comparing to L4 female B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F30_vs_L4

0 Expression Patterns

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  involved_in
  enables
  enables

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term