WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00225477 Gene Name  Bma-met-2
Sequence Name  ? Bm5216 Organism  Brugia malayi
Automated Description  Predicted to enable DNA binding activity; histone methyltransferase activity; and zinc ion binding activity. Predicted to be located in nucleus. Is an ortholog of C. elegans met-2. In C. elegans, met-2 is involved in several processes, including negative regulation of vulval development; regulation of gene expression; and vulval cell fate commitment. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm5216b.1 Bm5216b.1   [unknown]
Transcript:Bm5216a.1 Bm5216a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm5216b Bm5216b   [unknown]
CDS:Bm5216a Bm5216a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F120_vs_F30
  Time-course transcript abundance profiles. P116, k-means clusters of Brugia malayi during development in Aedes aegypti LVP between day 1 and 8 post infection; H114, k-means clusters of Ae. aegypti LVP infected with B. malayi between day 0 and 8 post infection; and HR14, host response profile comparing infected vs. uninfected A. aegypti LVP. Non-flat profiles (p < 0.01 and maximum fold-difference among time points > 2) were grouped into common temporal patterns using k-means clustering. WBPaper00045439:BM_Cluster_P16

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term