WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00227123 Gene Name  Bma-zipt-15
Sequence Name  ? Bm6862 Organism  Brugia malayi
Automated Description  Predicted to enable metal ion transmembrane transporter activity. Predicted to be involved in metal ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans zipt-15. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm6862b.1 Bm6862b.1   [unknown]
Transcript:Bm6862a.1 Bm6862a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm6862a Bm6862a   [unknown]
CDS:Bm6862b Bm6862b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly lower expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Downregulated
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated
  Transcripts that showed significantly lower expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Downregulated

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term