WormMine: Gene WBGene00258367

• WormBase Gene ID: WBGene00258367
• Gene Name: SRAE_1000175800
• Sequence Name: SRAE_1000175800
• Organism: Strongyloides ratti
• Automated Description: Predicted to enable several functions, including ATP binding activity; ATP-dependent chromatin remodeler activity; and protein kinase activity. Predicted to be involved in chromatin remodeling; cyclic nucleotide biosynthetic process; and intracellular signal transduction. Is an ortholog of C. elegans chd-3 and let-418. In C. elegans, chd-3 is involved in cell fate determination; negative regulation of Ras protein signal transduction; and negative regulation of vulval development.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Strongyloides ratti
• Taxon Id: 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:SRAE_1000175800.1	SRAE_1000175800.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:SRAE_1000175800	SRAE_1000175800		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
parasitic vs free-living.	Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to free living female stage.	Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2.	WBPaper00050919:down_infective-L3_vs_free-living_mRNA

0 Expression Patterns

8 GO Annotation

0 Homologues

0 Locations

8 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term