WormMine: Gene WBGene00263550

• WormBase Gene ID: WBGene00263550
• Gene Name: SRAE_2000332800
• Sequence Name: SRAE_2000332800
• Organism: Strongyloides ratti
• Automated Description: Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans haf-9. In C. elegans, haf-9 is involved in lysosomal transport and regulatory ncRNA-mediated post-transcriptional gene silencing.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Strongyloides ratti
• Taxon Id: 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:SRAE_2000332800.1	SRAE_2000332800.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:SRAE_2000332800	SRAE_2000332800		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
parasitic vs free-living.	Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats).	Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2.	WBPaper00050919:down_infective-L3_vs_parasitic_mRNA
parasitic vs free-living.	Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to free living female stage.	Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2.	WBPaper00050919:down_infective-L3_vs_free-living_mRNA
parasitic vs free-living.	Proteins that showed significantly decreased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage.	Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05.	WBPaper00050919:down_parasitic_vs_free-living_protein

0 Expression Patterns

5 GO Annotation

0 Homologues

0 Locations

5 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term