WormMine: Gene WBGene00265930

• WormBase Gene ID: WBGene00265930
• Gene Name: SRAE_X000037100
• Sequence Name: SRAE_X000037100
• Organism: Strongyloides ratti
• Automated Description: Predicted to enable ATP binding activity; UMP/dUMP kinase activity; and cytidylate kinase activity. Predicted to be involved in 'de novo' pyrimidine nucleobase biosynthetic process and pyrimidine nucleotide biosynthetic process. Is an ortholog of C. elegans C29F7.3 and F40F8.1. In C. elegans, C29F7.3 is involved in UDP biosynthetic process.
• Biotype: SO:0001217
• Genetic Position: :±

1 Organism

• Name: Strongyloides ratti
• Taxon Id: 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:SRAE_X000037100.1	SRAE_X000037100.1		[unknown]

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:SRAE_X000037100	SRAE_X000037100		[unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

• WormBaseAcedbConverter
• GO Annotation data set

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
parasitic vs free-living.	Transcripts that showed significantly increased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats).	Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2.	WBPaper00050919:up_infective-L3_vs_parasitic_mRNA
parasitic vs free-living.	Transcripts that showed significantly decreased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage.	Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2.	WBPaper00050919:down_parasitic_vs_free-living_mRNA
parasitic vs free-living.	Proteins that showed significantly increased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage.	Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05.	WBPaper00050919:up_parasitic_vs_free-living_protein

0 Expression Patterns

7 GO Annotation

0 Homologues

0 Locations

7 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term