WormMine: Gene WBGene00195427

• WormBase Gene ID: WBGene00195427
• Gene Name: F02A9.8
• Sequence Name: F02A9.8
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1; fzo-1; and etr-1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 133

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195427

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F02A9.8	F02A9.8	133	III: 9081281-9081413

Other

0 CDSs

0 RNAi Result

3 Allele

• gk964518
• gk963887
• gk334614

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195427
• Start: 9081281
• End: 9081413
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_9081414..9081465
• Length (nt): 52
• Chromosome Location: III: 9081414-9081465
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria: E.faecalis strain OG1RF	Transcripts that showed significantly increased expression after infection by E. faecalis OG1RF.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:E.faecalis_OG1RF_upregulated
	Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals.	Fold change >= 1.5.	WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195427
• Start: 9081281
• End: 9081413
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 133

1 Sequence Ontology Term