WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014457 Gene Name  MTCE.10
Sequence Name  ? MTCE.10 Organism  Caenorhabditis elegans
Automated Description  Enriched in anchor cell based on RNA-seq studies. Is affected by camt-1 and sams-3 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  :± Length (nt)  ? 55
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014457

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:MTCE.10 MTCE.10 55   MtDNA: 1707-1761
 

Other

0 CDSs

0 RNAi Result

1 Allele

Public Name
WBVar02048857

1 Chromosome

WormBase ID Organism Length (nt)
MtDNA Caenorhabditis elegans 13794  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014457 1707 1761 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrMtDNA_1762..1762   1 MtDNA: 1762-1762 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in sams-3(RNAi) comparing to N2 animals injected with empty vector. Deseq FDR < 0.01, fold change > 2. WBPaper00065005:sams-3(RNAi)_upregulated
  Transcripts enriched in invading anchor cells comparing to in whole animal. DESeq2v.1.30.1. fold change >= 2, FDR < 0.05 WBPaper00065258:anchor-cell_enriched
  Transcripts that showed significantly altered expression at RMG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_RMG

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014457 1707 1761 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
55

1 Sequence Ontology Term