WormMine: Gene WBGene00219666

• WormBase Gene ID: WBGene00219666
• Gene Name: linc-31
• Sequence Name: D1014.12
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AVK; AVKL; BAGL; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including etr-1; ints-6; and elli-1 based on microarray and RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: V :1.06759±
• Length (nt): 2430

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219666

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:D1014.12	D1014.12	1410	V: 8152035-8154464

Other

0 CDSs

1 RNAi Result

• WBRNAi00012580

24 Allele

• gk963301
• gk964351
• gk962860
• gk964047
• gk964046
• WBVar01862907
• WBVar00213279
• gk803282
• gk791959
• gk627801
• gk935193
• gk899595
• gk682757
• gk656909
• WBVar02010835
• gk240825
• gk240826
• gk240823
• gk240824
• ok5761
• gk240821
• WBVar01823762
• gk240822
• WBVar00213278

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219666
• Start: 8152035
• End: 8154464
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

11 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in JCP294 ints-6(t1903) IV (ints-6 is also known as dic-1) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-6(t1903)_upregulated
	Transcripts that showed significantly depleted expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_depleted
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Single-cell RNA-Seq cell group 74_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:74_0
	Transcripts that showed significantly increased expression in FACS sorted neuron cells (labelled by pan-neuronal GFP) from edIs6[unc-119::GFP + rol-6(su1006)]; thoc-5(wy822) comparing to in edIs6.	DESeq2, log2 fold change > 2, adjusted p-value < 0.005.	WBPaper00055103:thoc-5(wy822)_upregulated
	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.	edgeR, FDR < 0.001, fold change > 2.	WBPaper00055565:AVK_enriched
	Transcripts that showed significantly increased expression in elli-1(sam-3) comparing to in N2 animals, accordingto tiling array analysis.	Fold change > 1.2, q-value < 0.05.	WBPaper00050743:elli-1(sam-3)_downregulated
	Single-cell RNA-Seq cell group 85_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:85_0
	Transcripts that showed significantly increased expression in mitosis germline cells comparing to in meiosis germline cells.	Log2 Fold change > 2 or <-1, p-value < 0.05.	WBPaper00053599:mitosis_vs_meiosis_upregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219666
• Start: 8152035
• End: 8154464
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2430

1 Sequence Ontology Term