WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Hide

Oops!

http://intermine.wormbase.org/tools/wormmine/service/ is incorrect

mRNA :

WormMine ID  Transcript:T27F2.2k.1 Sequence Name  T27F2.2k.1
Length (nt)  2871   Chromosome Location  V: 11631872-11637206
Chromosome . Primary Identifier  V Chromosome Location . Start  11631872
Chromosome Location . End  11637206 Method  Coding_transcript
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2k T27F2.2k 2871   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2k.1 11631872 11637206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199118   69   V: 11631872-11631940 Caenorhabditis elegans
Exon199129   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199142   148   V: 11632320-11632467 Caenorhabditis elegans
Exon199148   45   V: 11632527-11632571 Caenorhabditis elegans
Exon199166   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199179   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199192   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199205   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199218   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199231   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199244   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199256   196   V: 11637011-11637206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2k.1 11631872 11637206 -1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript