WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0006366 transcription by RNA polymerase II GO

Namespace  biological_process Obsolete  false
Description  The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

80 Ontology Annotations

Annotation Extension Qualifier
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16 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0090304 nucleic acid metabolic process Any cellular metabolic process involving nucleic acids.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0008152 metabolic process A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.
GO:0043170 macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0009058 biosynthetic process A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0009059 macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0006366 transcription by RNA polymerase II The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
GO:0141187 nucleic acid biosynthetic process The biosynthetic process resulting in the formation of a nucleic acid.
GO:0034654 nucleobase-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0016070 RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
GO:0010467 gene expression The process in which a gene's sequence is converted into a mature gene product (protein or RNA). This includes the production of an RNA transcript and its processing, as well as translation and maturation for protein-coding genes.
GO:0032774 RNA biosynthetic process The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. Refers not only to transcription but also to e.g. viral RNA replication.
GO:0006351 DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

112 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
negatively regulates GO:0006366 GO:0000122
negatively regulates GO:0006366 GO:0000122
regulates GO:0006366 GO:0000122
regulates GO:0006366 GO:0000429
regulates GO:0006366 GO:0000430
regulates GO:0006366 GO:0000431
positively regulates GO:0006366 GO:0000432
regulates GO:0006366 GO:0000432
regulates GO:0006366 GO:0000433
negatively regulates GO:0006366 GO:0000434
regulates GO:0006366 GO:0000434
regulates GO:0006366 GO:0000435
positively regulates GO:0006366 GO:0000435
regulates GO:0006366 GO:0000436
positively regulates GO:0006366 GO:0000436
negatively regulates GO:0006366 GO:0000437
regulates GO:0006366 GO:0000437
is_a GO:0006366 GO:0001015
regulates GO:0006366 GO:0001079
regulates GO:0006366 GO:0001080
regulates GO:0006366 GO:0001081
part of GO:0006366 GO:0001111
part of GO:0006366 GO:0001113
part of GO:0006366 GO:0001139
part of GO:0006366 GO:0001174
regulates GO:0006366 GO:0001178
part of GO:0006366 GO:0001193
regulates GO:0006366 GO:0006357
regulates GO:0006366 GO:0006357
is_a GO:0006351 GO:0006366

8 Synonyms

Name Type
transcription from Pol II promoter synonym
specific transcription from RNA polymerase II promoter synonym
GO:0032568 alt_id
transcription from RNA polymerase II promoter synonym
GO:0032569 alt_id
gene-specific transcription from RNA polymerase II promoter synonym
RNA polymerase II transcription factor activity synonym
general transcription from RNA polymerase II promoter synonym