WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0120114 Sm-like protein family complex GO

Namespace  cellular_component Obsolete  false
Description  A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

4 Ontology Annotations

Annotation Extension Qualifier
  part_of
  part_of
  part_of
  part_of

3 Parents

Identifier Name Description
GO:0032991 protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0120114 Sm-like protein family complex A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.

59 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
has part GO:0120114 GO:0000243
is_a GO:0120114 GO:0005682
is_a GO:0120114 GO:0005683
is_a GO:0120114 GO:0005685
is_a GO:0120114 GO:0005686
is_a GO:0120114 GO:0005687
has part GO:0120114 GO:0005688
is_a GO:0120114 GO:0005688
is_a GO:0120114 GO:0005690
is_a GO:0120114 GO:0005691
is_a GO:0120114 GO:0005692
is_a GO:0120114 GO:0005693
is_a GO:0120114 GO:0030532
is_a GO:0120114 GO:0032797
part of GO:0120114 GO:0032797
is_a GO:0120114 GO:0034693
is_a GO:0120114 GO:0034715
is_a GO:0120114 GO:0034718
is_a GO:0120114 GO:0034719
has part GO:0120114 GO:0034719
is_a GO:0120114 GO:0034730
has part GO:0120114 GO:0034730
is_a GO:0120114 GO:0034731
has part GO:0120114 GO:0034731
is_a GO:0120114 GO:0046540
has part GO:0120114 GO:0046540
is_a GO:0120114 GO:0071001
has part GO:0120114 GO:0071001
is_a GO:0120114 GO:0071002
has part GO:0120114 GO:0071002

0 Synonyms