WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0000342 RNA cap 4 binding GO

Namespace  molecular_function Obsolete  false
Description  Binding to a hypermethylated cap structure consisting of 7-methylguanosine (m(7)G) followed by four methylated nucleotides (cap 4): 7-methylguanosine-ppp-N6, N6, 2'-O-trimethyladenosine-p-2'-O-methyladenosine-p-2'-O-methylcytosine-p-N3, 2'-O-dimethyluridine Such caps are known to be found at the 5' ends of SL RNAs of trypanosomatid protozoa.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

6 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003723 RNA binding Binding to an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Binding to a nucleic acid.
GO:0000339 RNA cap binding Binding to a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
GO:0000342 RNA cap 4 binding Binding to a hypermethylated cap structure consisting of 7-methylguanosine (m(7)G) followed by four methylated nucleotides (cap 4): 7-methylguanosine-ppp-N6, N6, 2'-O-trimethyladenosine-p-2'-O-methyladenosine-p-2'-O-methylcytosine-p-N3, 2'-O-dimethyluridine Such caps are known to be found at the 5' ends of SL RNAs of trypanosomatid protozoa.

5 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0000339 GO:0000342
is_a GO:0003674 GO:0000342
is_a GO:0005488 GO:0000342
is_a GO:0003676 GO:0000342
is_a GO:0003723 GO:0000342

0 Synonyms