WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0003972 RNA ligase (ATP) activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the reaction: ATP + (ribonucleotide)n-3'-hydroxyl + 5'-phospho-(ribonucleotide)m = (ribonucleotide)n+m + AMP + diphosphate.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

2 Ontology Annotations

Annotation Extension Qualifier
has_input(WB:WBGene00006959),part_of(GO:0036498)|has_input(WB:WBGene00006959),part_of(GO:0036498) enables
has_input(WB:WBGene00006959),part_of(GO:0036498)|has_input(WB:WBGene00006959),part_of(GO:0036498) enables

8 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0140640 catalytic activity, acting on a nucleic acid Catalytic activity that acts to modify a nucleic acid.
GO:0016874 ligase activity Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient.
GO:0140098 catalytic activity, acting on RNA Catalytic activity that acts to modify RNA.
GO:0016886 ligase activity, forming phosphoric ester bonds Catalysis of the joining of two molecules, or two groups within a single molecule, via a phosphoric ester bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO:0008452 RNA ligase activity Catalysis of the formation of a phosphodiester bond between a hydroxyl group at the end of one RNA chain and the phosphate group at the end of another.
GO:0003972 RNA ligase (ATP) activity Catalysis of the reaction: ATP + (ribonucleotide)n-3'-hydroxyl + 5'-phospho-(ribonucleotide)m = (ribonucleotide)n+m + AMP + diphosphate.

7 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0008452 GO:0003972
is_a GO:0016886 GO:0003972
is_a GO:0140640 GO:0003972
is_a GO:0016874 GO:0003972
is_a GO:0003674 GO:0003972
is_a GO:0140098 GO:0003972
is_a GO:0003824 GO:0003972

4 Synonyms

Name Type
polyribonucleotide ligase activity synonym
poly(ribonucleotide):poly(ribonucleotide) ligase (AMP-forming) synonym
ribonucleic ligase activity synonym
polyribonucleotide synthase (ATP) activity synonym