WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0062023 collagen-containing extracellular matrix GO

Namespace  cellular_component Obsolete  false
Description  An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

21 Ontology Annotations

Annotation Extension Qualifier
  located_in
  located_in
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6 Parents

Identifier Name Description
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0071944 cell periphery The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
GO:0030312 external encapsulating structure A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space.
GO:0062023 collagen-containing extracellular matrix An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.

55 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
part of GO:0062023 GO:0005583
part of GO:0062023 GO:0005584
part of GO:0062023 GO:0005585
part of GO:0062023 GO:0005586
part of GO:0062023 GO:0005587
part of GO:0062023 GO:0005588
part of GO:0062023 GO:0005590
part of GO:0062023 GO:0005591
part of GO:0062023 GO:0005592
part of GO:0062023 GO:0005599
is_a GO:0062023 GO:0005614
part of GO:0062023 GO:0032579
is_a GO:0062023 GO:0033165
is_a GO:0062023 GO:0033166
is_a GO:0062023 GO:0060102
part of GO:0062023 GO:0060104
part of GO:0062023 GO:0060105
part of GO:0062023 GO:0060106
part of GO:0062023 GO:0060107
part of GO:0062023 GO:0060108
part of GO:0062023 GO:0060109
part of GO:0062023 GO:0060110
part of GO:0062023 GO:0060111
is_a GO:0031012 GO:0062023
is_a GO:0005575 GO:0062023
part of GO:0110165 GO:0062023
is_a GO:0110165 GO:0062023
part of GO:0005575 GO:0062023
part of GO:0071944 GO:0062023
is_a GO:0030312 GO:0062023

1 Synonyms

Name Type
collagen-containing ECM synonym