WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0005589 collagen type VI trimer GO

Namespace  cellular_component Obsolete  false
Description  A collagen heterotrimer containing type VI alpha chains in alpha1(VI)alpha2(VI)alpha3(VI) trimers; type VI collagen triple helices associate to form beaded fibrils.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

13 Parents

Identifier Name Description
GO:0032991 protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0071944 cell periphery The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.
GO:0099080 supramolecular complex A cellular component that consists of an indeterminate number of proteins or macromolecular complexes, organized into a regular, higher-order structure such as a polymer, sheet, network or a fiber.
GO:0099512 supramolecular fiber A polymer consisting of an indefinite number of protein or protein complex subunits that have polymerised to form a fiber-shaped structure.
GO:0099081 supramolecular polymer A polymeric supramolecular structure.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
GO:0030312 external encapsulating structure A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space.
GO:0005581 collagen trimer A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
GO:0098647 collagen beaded filament A supramolecular assembly of collagen trimers with a 'beads on a string'-like structure.
GO:0005589 collagen type VI trimer A collagen heterotrimer containing type VI alpha chains in alpha1(VI)alpha2(VI)alpha3(VI) trimers; type VI collagen triple helices associate to form beaded fibrils.
GO:0140086 basement membrane/interstitial matrix interface The structure located at the interface of the basement membrane and interstitial extracellular matrix and anchoring the two types of ECM to one another.

13 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
part of GO:0098647 GO:0005589
is_a GO:0005581 GO:0005589
part of GO:0110165 GO:0005589
part of GO:0099512 GO:0005589
is_a GO:0005575 GO:0005589
part of GO:0099080 GO:0005589
part of GO:0099081 GO:0005589
is_a GO:0032991 GO:0005589
part of GO:0140086 GO:0005589
part of GO:0031012 GO:0005589
part of GO:0005575 GO:0005589
part of GO:0071944 GO:0005589
part of GO:0030312 GO:0005589

0 Synonyms