WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039499 Gene Name  Cbr-hot-2
Sequence Name  ? CBG20535 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Caenorhabditis elegans ly-6-related and Caenorhabditis elegans ly-6-related protein. Is an ortholog of C. elegans hot-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20535a.1 CBG20535a.1   [unknown]
Transcript:CBG20535b.1 CBG20535b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20535a CBG20535a   [unknown]
CDS:CBG20535b CBG20535b   [unknown]

0 RNAi Result

81 Allele

Public Name
WBVar00139318
WBVar00139316
WBVar00139317
WBVar00139307
WBVar00139308
WBVar00139305
WBVar00139306
WBVar00139309
WBVar00139310
WBVar00139311
WBVar00139314
WBVar00139315
WBVar00139312
WBVar00139313
WBVar00028922
WBVar00029052
WBVar00029182
WBVar00028927
WBVar00029057
WBVar00029187
WBVar00028932
WBVar00029062
WBVar00029192
WBVar00028937
WBVar00029067
WBVar00029197
WBVar00028942
WBVar00029072
WBVar00029202
WBVar00028947

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20534, CACCTCCCGAAATCCATCAGATGAGCGAAGAGGAGAAATCTGTAATTTGGCAGAATCCAG, WBGene00039498   Expr1065554 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-hot-2, CGTGTCCTGAGGCACGGATTCAATCAATCAGCACTCAGAACTCATCGATTTCATCAGAAT, WBGene00039499   Expr1066282 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term