WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0008979 prophage integrase activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the integration of prophage DNA into a target DNA molecule, usually a bacterial chromosome, via a sequence-specific recombination event which involves the formation of an intasome, a DNA-protein-complex designed for site-specific recombination of the phage and host DNA.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

20 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0090304 nucleic acid metabolic process Any cellular metabolic process involving nucleic acids.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0008152 metabolic process A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.
GO:0043170 macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0140640 catalytic activity, acting on a nucleic acid Catalytic activity that acts to modify a nucleic acid.
GO:0140097 catalytic activity, acting on DNA Catalytic activity that acts to modify DNA.
GO:0016032 viral process A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
GO:0015074 DNA integration The process in which a DNA segment is incorporated into another, usually larger, DNA molecule such as a chromosome.
GO:0008907 integrase activity Catalysis of the integration of one DNA segment into another.
GO:0075713 establishment of integrated proviral latency A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
GO:0008979 prophage integrase activity Catalysis of the integration of prophage DNA into a target DNA molecule, usually a bacterial chromosome, via a sequence-specific recombination event which involves the formation of an intasome, a DNA-protein-complex designed for site-specific recombination of the phage and host DNA.
GO:0009009 site-specific recombinase activity Catalysis of the formation of new phosphodiester bonds between a pair of short, unique target DNA sequences.
GO:0019043 establishment of viral latency A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects.
GO:0019042 viral latency The process by which, after initial infection, a virus lies dormant within a cell and viral production ceases. The process ends when the virus switches from latency and starts to replicate.

19 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
part of GO:0075713 GO:0008979
is_a GO:0009009 GO:0008979
part of GO:0006259 GO:0008979
part of GO:0006139 GO:0008979
part of GO:0009987 GO:0008979
part of GO:0043170 GO:0008979
part of GO:0019043 GO:0008979
is_a GO:0008907 GO:0008979
part of GO:0019042 GO:0008979
is_a GO:0003824 GO:0008979
part of GO:0016032 GO:0008979
part of GO:0090304 GO:0008979
part of GO:0044238 GO:0008979
is_a GO:0003674 GO:0008979
part of GO:0015074 GO:0008979
part of GO:0008150 GO:0008979
is_a GO:0140097 GO:0008979
part of GO:0008152 GO:0008979
is_a GO:0140640 GO:0008979

1 Synonyms

Name Type
integrase activity involved in establishment of integrated proviral latency synonym