WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041068 Gene Name  Cbr-sma-10
Sequence Name  ? CBG22529 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; Immunoglobulin subtype; Immunoglobulin-like fold; Immunoglobulin domain; Leucine-rich repeat; Leucine-rich repeat, typical subtype; Immunoglobulin subtype 2; Leucine rich repeat; Leucine-rich repeat domain superfamily; and Immunoglobulin-like domain superfamily. Is an ortholog of C. elegans sma-10. In C. elegans, sma-10 is involved in several processes, including positive regulation of transforming growth factor beta receptor signaling pathway; regulation of mesodermal cell fate specification; and transforming growth factor beta receptor signaling pathway. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22529.1 CBG22529.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22529 CBG22529   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00034172
WBVar00034177

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG22529, GGAGAATACTCGTGTGAATTATGGGCTGATGATTCGATGCTGATAAGGAAAGTGACCAAT, WBGene00041068   Expr1065425 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term