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WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO

Namespace  biological_process Obsolete  false
Description  The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

21 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0008152 metabolic process A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.
GO:0009058 biosynthetic process A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:1901135 carbohydrate derivative metabolic process The chemical reactions and pathways involving carbohydrate derivative.
GO:0008610 lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0006796 phosphate-containing compound metabolic process The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
GO:0006793 phosphorus metabolic process The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus.
GO:0006720 isoprenoid metabolic process The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO:0008299 isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO:0006644 phospholipid metabolic process The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester.
GO:0019637 organophosphate metabolic process The chemical reactions and pathways involving organophosphates, any phosphate-containing organic compound.
GO:0090407 organophosphate biosynthetic process The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.
GO:0008654 phospholipid biosynthetic process The chemical reactions and pathways resulting in the formation of a phospholipid, a lipid containing phosphoric acid as a mono- or diester.
GO:0006081 aldehyde metabolic process The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.
GO:0019682 glyceraldehyde-3-phosphate metabolic process The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis.
GO:0046490 isopentenyl diphosphate metabolic process The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
GO:0009240 isopentenyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.

34 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
regulates GO:0019288 GO:0010322
regulates GO:0019288 GO:0010322
negatively regulates GO:0019288 GO:0010323
negatively regulates GO:0019288 GO:0010323
regulates GO:0019288 GO:0010323
is_a GO:0009240 GO:0019288
is_a GO:0019682 GO:0019288
is_a GO:0006629 GO:0019288
part of GO:0009058 GO:0019288
part of GO:0044238 GO:0019288
part of GO:0006720 GO:0019288
is_a GO:0006644 GO:0019288
is_a GO:0009058 GO:0019288
is_a GO:0008152 GO:0019288
is_a GO:0090407 GO:0019288
is_a GO:0019637 GO:0019288
is_a GO:0008150 GO:0019288
is_a GO:0046490 GO:0019288
part of GO:0008299 GO:0019288
part of GO:0008610 GO:0019288
is_a GO:0006796 GO:0019288
is_a GO:0044238 GO:0019288
part of GO:0009987 GO:0019288
is_a GO:0009987 GO:0019288
is_a GO:1901135 GO:0019288
is_a GO:0006793 GO:0019288
is_a GO:0008654 GO:0019288
is_a GO:0008610 GO:0019288
part of GO:0006629 GO:0019288
is_a GO:0006081 GO:0019288

13 Synonyms

Name Type
isopentenyl diphosphate anabolism, mevalonate-independent pathway synonym
isopentenyl diphosphate biosynthesis, non-mevalonate pathway synonym
isopentenyl diphosphate biosynthesis, mevalonate-independent synonym
isopentenyl diphosphate biosynthetic process, MEP pathway synonym
isopentenyl diphosphate biosynthetic process via 1-deoxy-D-xylulose 5-phosphate synonym
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway synonym
isopentenyl diphosphate biosynthetic process, mevalonate-independent synonym
isopentenyl diphosphate formation, mevalonate-independent pathway synonym
isopentenyl diphosphate biosynthetic process, non-mevalonate pathway synonym
mevalonate-independent isopentenyl diphosphate biosynthesis synonym
isopentenyl diphosphate synthesis, mevalonate-independent pathway synonym
non-MVA pathway synonym
mevalonate-independent isopentenyl diphosphate biosynthetic process synonym