WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031390 Gene Name  CBG09876
Sequence Name  ? CBG09876 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Alpha crystallin/Small heat shock protein, animal type; Alpha crystallin/Hsp20 domain; Hsp20/alpha crystallin family; and HSP20-like chaperone. Is an ortholog of C. elegans ZK1128.7. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09876b.1 CBG09876b.1   [unknown]
Transcript:CBG09876a.1 CBG09876a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09876a CBG09876a   [unknown]
CDS:CBG09876b CBG09876b   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00034914
WBVar00034919
WBVar00034924
WBVar00034909
WBVar00006879
WBVar00006884
WBVar00115358
WBVar00115359
WBVar00115360
WBVar00115361
WBVar00115362
WBVar00115363
WBVar00115355
WBVar00115356
WBVar00115357

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09876, AAAGTTGTGCTCACAGATGATACATTGAGCATTTCGGGAGAACGTTTTGAATCTACTGGA, WBGene00031390   Expr1068498 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term