WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033330 Gene Name  Cbr-cids-2
Sequence Name  ? CBG12372 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: CID domain and ENTH/VHS. Is an ortholog of C. elegans cids-2. In C. elegans, cids-2 is involved in mRNA 3'-end processing. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12372b.1 CBG12372b.1   [unknown]
Transcript:CBG12372a.1 CBG12372a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12372a CBG12372a   [unknown]
CDS:CBG12372b CBG12372b   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00037259
WBVar00008939
WBVar00118464
WBVar00118465

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cids-2, ATATGACGACCGTAGAAATCATGACTATGATGATCGCAGAAAGTCAGCTCCGTATCCAAG, WBGene00033330   Expr1060132 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term