WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0019353 protoporphyrinogen IX biosynthetic process from glutamate GO

Namespace  biological_process Obsolete  false
Description  The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

28 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0008152 metabolic process A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.
GO:0009058 biosynthetic process A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
GO:0043436 oxoacid metabolic process The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
GO:0006082 organic acid metabolic process The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage.
GO:0044281 small molecule metabolic process The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule.
GO:1901605 alpha-amino acid metabolic process The chemical reactions and pathways involving an alpha-amino acid.
GO:0006520 amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups.
GO:0170033 L-amino acid metabolic process The chemical reactions and pathways involving an L-amino acid.
GO:0170039 proteinogenic amino acid metabolic process The chemical reactions and pathways involving any amino acid that is incorporated into protein naturally by ribosomal translation of mRNA, and that has a specific codon for translation from mRNA to protein.
GO:0009064 glutamine family amino acid metabolic process The chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.
GO:0043648 dicarboxylic acid metabolic process The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-).
GO:0006536 glutamate metabolic process The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
GO:0042440 pigment metabolic process The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.
GO:0046148 pigment biosynthetic process The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.
GO:0033013 tetrapyrrole metabolic process The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
GO:0006778 porphyrin-containing compound metabolic process The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO:0006779 porphyrin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO:0033014 tetrapyrrole biosynthetic process The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
GO:0006782 protoporphyrinogen IX biosynthetic process The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
GO:0046501 protoporphyrinogen IX metabolic process The chemical reactions and pathways involving protoporphyrinogen IX, the specific substrate for the enzyme ferrochelatase, which catalyzes the insertion of iron to form protoheme. It is probably also the substrate for chlorophyll formation.
GO:0006783 heme biosynthetic process The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
GO:0042168 heme metabolic process The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0019353 protoporphyrinogen IX biosynthetic process from glutamate The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
GO:0033526 tetrapyrrole biosynthetic process from glutamate The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next, from other compounds, including L-glutamate.

35 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0006782 GO:0019353
is_a GO:0033526 GO:0019353
part of GO:0033014 GO:0019353
part of GO:0033013 GO:0019353
is_a GO:0006779 GO:0019353
part of GO:0009987 GO:0019353
is_a GO:0044238 GO:0019353
is_a GO:0009987 GO:0019353
part of GO:0006778 GO:0019353
is_a GO:0170033 GO:0019353
part of GO:0006779 GO:0019353
is_a GO:0006778 GO:0019353
is_a GO:0006536 GO:0019353
is_a GO:0170039 GO:0019353
is_a GO:0033013 GO:0019353
is_a GO:0009058 GO:0019353
is_a GO:0043648 GO:0019353
is_a GO:0006082 GO:0019353
is_a GO:0033014 GO:0019353
part of GO:0008150 GO:0019353
part of GO:0008152 GO:0019353
part of GO:0009058 GO:0019353
part of GO:0006783 GO:0019353
is_a GO:0044281 GO:0019353
is_a GO:1901605 GO:0019353
is_a GO:0046501 GO:0019353
is_a GO:0006520 GO:0019353
is_a GO:0043436 GO:0019353
part of GO:0046148 GO:0019353
is_a GO:0008150 GO:0019353

3 Synonyms

Name Type
protoporphyrinogen IX anabolism from glutamate synonym
protoporphyrinogen IX synthesis from glutamate synonym
protoporphyrinogen IX formation from glutamate synonym