WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0030937 collagen type XVII trimer GO

Namespace  cellular_component Obsolete  false
Description  A collagen homotrimer of alpha1(XVII) chains; type XVII collagen triple helices span the plasma membrane and associate with hemidesmosomes and the basal lamina where they bind laminin.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

14 Parents

Identifier Name Description
GO:0032991 protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0071944 cell periphery The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.
GO:0098796 membrane protein complex Any protein complex that is part of a membrane.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
GO:0005886 plasma membrane The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO:0098797 plasma membrane protein complex Any protein complex that is part of the plasma membrane.
GO:0005581 collagen trimer A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
GO:0030936 transmembrane collagen trimer Any collagen trimer that passes through a lipid bilayer membrane.
GO:0098636 protein complex involved in cell adhesion Any protein complex that is capable of carrying out some part of the process of cell adhesion to the cell matrix or to another cell.
GO:0030937 collagen type XVII trimer A collagen homotrimer of alpha1(XVII) chains; type XVII collagen triple helices span the plasma membrane and associate with hemidesmosomes and the basal lamina where they bind laminin.
GO:0098637 protein complex involved in cell-matrix adhesion Any protein complex that is capable of carrying out some part of the process of cell-matrix adhesion.
GO:0098733 hemidesmosome associated protein complex Any protein complex that is part of or has some part in a hemidesmosome.

14 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0030936 GO:0030937
is_a GO:0098637 GO:0030937
is_a GO:0098733 GO:0030937
is_a GO:0005581 GO:0030937
is_a GO:0098636 GO:0030937
is_a GO:0032991 GO:0030937
is_a GO:0098796 GO:0030937
part of GO:0005575 GO:0030937
is_a GO:0098797 GO:0030937
part of GO:0071944 GO:0030937
part of GO:0110165 GO:0030937
part of GO:0005886 GO:0030937
part of GO:0016020 GO:0030937
is_a GO:0005575 GO:0030937

0 Synonyms