WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035264 Gene Name  Cbr-tom-1
Sequence Name  ? CBG14886 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans tom-1. In C. elegans, tom-1 is involved in several processes, including regulation of presynaptic dense core granule exocytosis; regulation of synaptic vesicle docking; and synaptic vesicle priming. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14886e.1 CBG14886e.1   [unknown]
Transcript:CBG14886d.1 CBG14886d.1   [unknown]
Transcript:CBG14886c.1 CBG14886c.1   [unknown]
Transcript:CBG14886b.1 CBG14886b.1   [unknown]
Transcript:CBG14886a.1 CBG14886a.1   [unknown]
Transcript:CBG14886g.1 CBG14886g.1   [unknown]
Transcript:CBG14886f.1 CBG14886f.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14886a CBG14886a   [unknown]
CDS:CBG14886b CBG14886b   [unknown]
CDS:CBG14886c CBG14886c   [unknown]
CDS:CBG14886d CBG14886d   [unknown]
CDS:CBG14886e CBG14886e   [unknown]
CDS:CBG14886f CBG14886f   [unknown]
CDS:CBG14886g CBG14886g   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00001614
WBVar00121842
WBVar00121843
WBVar00121844
WBVar00121845

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tom-1, ACATGGGTGTCAAAAATAACGCTGGAATGAATCCGATGCGTAGCGTGGCCCGTACAATTC, WBGene00035264   Expr1070047 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term