WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034755 Gene Name  Cbr-sul-1
Sequence Name  ? CBG14172 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Sulfatase; Sulfatase, N-terminal; and Alkaline-phosphatase-like, core domain superfamily. Is an ortholog of C. elegans sul-1. In C. elegans, sul-1 is involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14172a.1 CBG14172a.1   [unknown]
Transcript:CBG14172b.1 CBG14172b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14172b CBG14172b   [unknown]
CDS:CBG14172a CBG14172a   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00002109
WBVar00017137
WBVar00029199
WBVar00029204

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sul-1, AGGCAAAAATATGCCATACGAGTTTGATATTCGAGTGCCATTTTTTATGAGAGGCCCTGG, WBGene00034755   Expr1059910 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term