WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029573 Gene Name  Cbr-atrn-1
Sequence Name  ? CBG07577 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Kelch-type beta propeller; Galactose oxidase/kelch, beta-propeller; EGF-like domain; CUB domain; Laminin EGF domain; Kelch motif; Kelch repeat type 1; PSI domain; Laminin-type EGF domain; Spermadhesin, CUB domain superfamily; Galactose oxidase, central domain; and Plexin repeat. Is an ortholog of C. elegans atrn-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07577.1 CBG07577.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07577 CBG07577   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00008342

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-53, CCCATCTTCAACTTTTCTATTTTCAGATGAGCTAGCTGTTGACTTCATTTTCACATTCAA, WBGene00029573   Expr1070121 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term