WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031010 Gene Name  Cbr-noca-1
Sequence Name  ? CBG09427 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans noca-1. In C. elegans, noca-1 is involved in cytoplasmic microtubule organization; germ cell development; and nematode larval development. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09427g.1 CBG09427g.1   [unknown]
Transcript:CBG09427f.1 CBG09427f.1   [unknown]
Transcript:CBG09427h.1 CBG09427h.1   [unknown]
Transcript:CBG09427c.1 CBG09427c.1   [unknown]
Transcript:CBG09427b.1 CBG09427b.1   [unknown]
Transcript:CBG09427e.1 CBG09427e.1   [unknown]
Transcript:CBG09427d.1 CBG09427d.1   [unknown]
Transcript:CBG09427a.1 CBG09427a.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09427h CBG09427h   [unknown]
CDS:CBG09427a CBG09427a   [unknown]
CDS:CBG09427b CBG09427b   [unknown]
CDS:CBG09427c CBG09427c   [unknown]
CDS:CBG09427d CBG09427d   [unknown]
CDS:CBG09427e CBG09427e   [unknown]
CDS:CBG09427f CBG09427f   [unknown]
CDS:CBG09427g CBG09427g   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00114858
WBVar00114859
WBVar00114860
WBVar00114861
WBVar00114862
WBVar00114867
WBVar00114868
WBVar00114869
WBVar00114863
WBVar00114864
WBVar00114865
WBVar00114866
WBVar00114870
WBVar00114871
WBVar00010952

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09430, TAAATCTGCAACGAACAATCTGCTCAAAGGACGGATGACTTCAGTTCTCGGCGGATCACT, WBGene00031012   Expr1061562 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG09427, GATACGATTCGGTGTCAACTAGCTGACTGGCATGGACAAACGAATGCAGAAGGAGAAGGC, WBGene00031010   Expr1065167 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG09429, CGACTATTCTCCGTAGATTGCAGAATGTCCAAGTATCAGAAGAATCAATCACTCCGTCAG, WBGene00031011   Expr1057310 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term