WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0034246 mitochondrial transcription factor activity GO

Namespace  molecular_function Obsolete  false
Description  Interacting with the mitochondrial promoter DNA to modulate transcription by the mitochondrial RNA polymerase.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

2 Ontology Annotations

Annotation Extension Qualifier
part_of(GO:0034514) enables
  enables

44 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0044238 primary metabolic process The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0090304 nucleic acid metabolic process Any cellular metabolic process involving nucleic acids.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0008152 metabolic process A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.
GO:0043170 macromolecule metabolic process The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0005737 cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0005622 intracellular anatomical structure A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm.
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0009058 biosynthetic process A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0009059 macromolecule biosynthetic process The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003676 nucleic acid binding Binding to a nucleic acid.
GO:0043227 membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:0043226 organelle Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.
GO:0043229 intracellular organelle Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
GO:0043231 intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:0141187 nucleic acid biosynthetic process The biosynthetic process resulting in the formation of a nucleic acid.
GO:0034654 nucleobase-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0016070 RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
GO:0010467 gene expression The process in which a gene's sequence is converted into a mature gene product (protein or RNA). This includes the production of an RNA transcript and its processing, as well as translation and maturation for protein-coding genes.
GO:0032774 RNA biosynthetic process The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. Refers not only to transcription but also to e.g. viral RNA replication.
GO:0006351 DNA-templated transcription The synthesis of an RNA transcript from a DNA template.
GO:0005515 protein binding Binding to a protein.
GO:1990837 sequence-specific double-stranded DNA binding Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003690 double-stranded DNA binding Binding to double-stranded DNA.

46 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0140110 GO:0034246
has part GO:0001001 GO:0034246
occurs in GO:0005739 GO:0034246
part of GO:0006390 GO:0034246
occurs in GO:0005739 GO:0034246
has part GO:0001018 GO:0034246
is_a GO:0140110 GO:0034246
occurs in GO:0110165 GO:0034246
occurs in GO:0005622 GO:0034246
part of GO:0000959 GO:0034246
part of GO:0044238 GO:0034246
part of GO:0006139 GO:0034246
is_a GO:0003674 GO:0034246
part of GO:0009987 GO:0034246
has part GO:0005515 GO:0034246
part of GO:0141187 GO:0034246
has part GO:0003677 GO:0034246
part of GO:0009059 GO:0034246
has part GO:0003676 GO:0034246
part of GO:0140053 GO:0034246
part of GO:0009058 GO:0034246
occurs in GO:0005737 GO:0034246
has part GO:0003674 GO:0034246
part of GO:0043170 GO:0034246
has part GO:0003690 GO:0034246
has part GO:0001050 GO:0034246
occurs in GO:0005575 GO:0034246
has part GO:0005488 GO:0034246
has part GO:1990837 GO:0034246
has part GO:0070063 GO:0034246

18 Synonyms

Name Type
GO:0001142 alt_id
GO:0000998 alt_id
GO:0001144 alt_id
GO:0001143 alt_id
mitochondrial polymerase transcription factor activity synonym
mitochondrial DNA-binding transcription factor activity synonym
mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity synonym
mitochondrial RNA polymerase binding promoter specificity activity synonym
mitochondrial RNA polymerase promoter specificity activity synonym
mitochondrial RNA polymerase core promoter sequence-specific DNA binding transcription factor activity synonym
mitochondrial sequence-specific DNA binding transcription factor activity synonym
mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding synonym
mitochondrial transcription initiation factor activity synonym
mitochondrial sequence-specific DNA-binding transcription factor activity synonym
transcription factor activity, mitochondrial proximal promoter sequence-specific binding synonym
sequence-specific DNA binding mitochondrial RNA polymerase transcription factor activity synonym
transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding synonym
transcription factor activity, mitochondrial RNA polymerase core promoter proximal region sequence-specific binding synonym