WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038353 Gene Name  Cbr-npa-1
Sequence Name  ? CBG19076 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Polyprotein allergen, nematode; DVA-1 superfamily; and Nematode polyprotein allergen ABA-1. Is an ortholog of C. elegans npa-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19076b.1 CBG19076b.1   [unknown]
Transcript:CBG19076a.1 CBG19076a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19076b CBG19076b   [unknown]
CDS:CBG19076a CBG19076a   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00127185
WBVar00127188
WBVar00127187
WBVar00127186
WBVar00026252
WBVar00026257
WBVar00026242
WBVar00026247

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-npa-1, GTTACAATCTTTGGGGAATCAAAAATGTTGCCAGAAGACGTCGTGTTCCAAACTCGGACG, WBGene00038353   Expr1066227 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term