WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039674 Gene Name  Cbr-hot-3
Sequence Name  ? CBG20748 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Caenorhabditis elegans ly-6-related and Caenorhabditis elegans ly-6-related protein. Is an ortholog of C. elegans hot-3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20748.1 CBG20748.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20748 CBG20748   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00128982
WBVar00128981
WBVar00128980
WBVar00128983
WBVar00128979
WBVar00128978
WBVar00128977
WBVar00128976
WBVar00128975
WBVar00128974
WBVar00128973

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hot-3, CCGTCTCTACATGAGAGGCTGTGCATTGACGATAGCTAGAAGAGGACTAAATAATCACAC, WBGene00039674   Expr1055478 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term