WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039308 Gene Name  Cbr-trak-1
Sequence Name  ? CBG20286 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: HAP1 N-terminal conserved region and HAP1, N-terminal. Is an ortholog of C. elegans trak-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20286.1 CBG20286.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20286 CBG20286   [unknown]

0 RNAi Result

27 Allele

Public Name
WBVar00128447
WBVar00128446
WBVar00128445
WBVar00128444
WBVar00128461
WBVar00128460
WBVar00128465
WBVar00128464
WBVar00128463
WBVar00128462
WBVar00128466
WBVar00128459
WBVar00128450
WBVar00128454
WBVar00128453
WBVar00128452
WBVar00128451
WBVar00128458
WBVar00128457
WBVar00128456
WBVar00128455
WBVar00128449
WBVar00128448
WBVar00028752
WBVar00028757
WBVar00028762
WBVar00028767

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20286, TTTGCAGCGTTTTGTCAACGGAAAGGTATCGATCAGCAACAGTTTTTCGGTAGTAGTCAG, WBGene00039308   Expr1056846 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term