WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0035516 broad specificity oxidative DNA demethylase activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O2 = a nucleobase within DNA + formaldehyde + succinate + CO2. Catalyzes oxidative demethylation of the DNA base lesions N1- methyladenine, N3-methylcytosine, N1-methylguanine, and N3- methylthymine. Can also act of RNA.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

1 Ontology Annotations

Annotation Extension Qualifier
  enables

11 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0140640 catalytic activity, acting on a nucleic acid Catalytic activity that acts to modify a nucleic acid.
GO:0140097 catalytic activity, acting on DNA Catalytic activity that acts to modify DNA.
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO:0051213 dioxygenase activity Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
GO:0016706 2-oxoglutarate-dependent dioxygenase activity Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO:0032451 demethylase activity Catalysis of the removal of a methyl group from a substrate.
GO:0035514 DNA demethylase activity Catalysis of the removal of a methyl group from one or more nucleosides within a DNA molecule.
GO:0035516 broad specificity oxidative DNA demethylase activity Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O2 = a nucleobase within DNA + formaldehyde + succinate + CO2. Catalyzes oxidative demethylation of the DNA base lesions N1- methyladenine, N3-methylcytosine, N1-methylguanine, and N3- methylthymine. Can also act of RNA.

10 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0035514 GO:0035516
is_a GO:0016706 GO:0035516
is_a GO:0003674 GO:0035516
is_a GO:0140097 GO:0035516
is_a GO:0051213 GO:0035516
is_a GO:0140640 GO:0035516
is_a GO:0032451 GO:0035516
is_a GO:0016705 GO:0035516
is_a GO:0003824 GO:0035516
is_a GO:0016491 GO:0035516

12 Synonyms

Name Type
oxidative DNA demethylase activity synonym
GO:0103051 alt_id
N1-methyladenine demethylase activity synonym
N3-methylcytosine demethylase activity synonym
GO:0103052 alt_id
GO:0103053 alt_id
1-ethyladenine demethylase activity synonym
2-oxoglutarate-dependent DNA demethylase synonym
5fC dioxygenase synonym
5hmC dioxygenase synonym
5-formylcytosine dioxygenase activity synonym
5-hydroxymethylcytosine dioxygenase activity synonym