WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036325 Gene Name  Cbr-eat-17
Sequence Name  ? CBG16368 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Rab-GTPase-TBC domain; Ecotropic viral integration site 5 protein; and Rab-GTPase-TBC domain superfamily. Is an ortholog of C. elegans eat-17. In C. elegans, eat-17 is involved in positive regulation of feeding behavior and regulation of presynaptic dense core granule exocytosis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16368a.1 CBG16368a.1   [unknown]
Transcript:CBG16368b.1 CBG16368b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16368b CBG16368b   [unknown]
CDS:CBG16368a CBG16368a   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00021147
WBVar00021132
WBVar00021137
WBVar00021142
WBVar00021127

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16369, CTCAAGTATTCGGAAGCGATGCAGACGATTCAAGATCTTCGTAGCAGCATTTCACAGTTG, WBGene00036326   Expr1061294 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16368, TATGGAAGGAATGCTCAAGTATTTCCAGCGAGAAGTCCGTGAGAGATATGAGAACGATGC, WBGene00036325   Expr1054187 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term