WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0047489 pectate disaccharide-lyase activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the reaction: a pectate = a pectate + 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate. This reaction is the eliminative cleavage of 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate from the reducing end of pectate, i.e. de-esterified pectin.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

6 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
GO:0016835 carbon-oxygen lyase activity Catalysis of the breakage of a carbon-oxygen bond.
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides Catalysis of the cleavage of a carbon-oxygen bond by the elimination of an alcohol from a polysaccharide.
GO:0047489 pectate disaccharide-lyase activity Catalysis of the reaction: a pectate = a pectate + 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate. This reaction is the eliminative cleavage of 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate from the reducing end of pectate, i.e. de-esterified pectin.

5 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0016837 GO:0047489
is_a GO:0003824 GO:0047489
is_a GO:0016835 GO:0047489
is_a GO:0003674 GO:0047489
is_a GO:0016829 GO:0047489

11 Synonyms

Name Type
Exo-PGL activity synonym
exopectate lyase activity synonym
Exo-PATE activity synonym
exo-PGL synonym
exopolygalacturonic acid-trans-eliminase activity synonym
PATE activity synonym
exopectic acid transeliminase activity synonym
exopolygalacturonate lyase activity synonym
pectate exo-lyase activity synonym
(1->4)-alpha-D-galacturonan reducing-end-disaccharide-lyase activity synonym
exo-PATE synonym